MRIQC: individual T1w report

Summary

Subject ID: 005_ExercisePre.
Date and time: 2018-05-06, 22:36.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3109775297599153
cnr			4.060897078301772
efc			0.6275616199893161
fber			53.081050872802734
fwhm	avg		4.119646666666667
fwhm	x		3.87569
fwhm	y		4.34012
fwhm	z		4.14313
icvs	csf		0.21994285041441
icvs	gm		0.43340286434169323
icvs	wm		0.34665428524389674
inu	med		1.3858799934387207
inu	range		0.33494729995727535
qi	1		0.00026123365593892626
qi	2		0.0006252855071692335
rpve	csf		20.05086385554177
rpve	gm		10.76854435985026
rpve	wm		16.17173126907776
size	x		180
size	y		256
size	z		256
snr	csf		2.3847117264860134
snr	gm		9.662482587765522
snr	total		9.273038493151349
snr	wm		15.771921165202514
snrd	csf		7.708504264961491
snrd	gm		18.849939478990816
snrd	total		19.1205727053781
snrd	wm		30.803274372181992
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	7.997107121111377
summary	bg	mad	21.268693923950195
summary	bg	mean	69.39460754394531
summary	bg	median	61.049007415771484
summary	bg	n	2641383.0
summary	bg	p05	35.77230377197266
summary	bg	p95	133.87490692138672
summary	bg	stdv	33.17574691772461
summary	csf	k	-0.029572520110460854
summary	csf	mad	113.32952117919922
summary	csf	mean	260.4688720703125
summary	csf	median	250.25296020507812
summary	csf	n	25306.0
summary	csf	p05	108.31736946105957
summary	csf	p95	441.52423095703125
summary	csf	stdv	104.9384765625
summary	gm	k	0.02765670587699587
summary	gm	mad	62.767311096191406
summary	gm	mean	611.0219116210938
summary	gm	median	611.9544067382812
summary	gm	n	32210.0
summary	gm	p05	504.86204528808594
summary	gm	p95	714.1699371337891
summary	gm	stdv	63.33205795288086
summary	wm	k	0.7010806436462329
summary	wm	mad	57.910438537597656
summary	wm	mean	999.46630859375
summary	wm	median	1000.0137939453125
summary	wm	n	222107.0
summary	wm	p05	891.8879272460937
summary	wm	p95	1101.4390380859375
summary	wm	stdv	63.40454864501953
tpm	overlap	csf	0.22168435156345367
tpm	overlap	gm	0.5236702561378479
tpm	overlap	wm	0.56402587890625
wm2max			0.5097489927081311

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	dc943530eea0aa70ac03f9e50fd96e95
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.