MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3109775297599153
cnr4.060897078301772
efc0.6275616199893161
fber53.081050872802734
fwhmavg4.119646666666667
fwhmx3.87569
fwhmy4.34012
fwhmz4.14313
icvscsf0.21994285041441
icvsgm0.43340286434169323
icvswm0.34665428524389674
inumed1.3858799934387207
inurange0.33494729995727535
qi10.00026123365593892626
qi20.0006252855071692335
rpvecsf20.05086385554177
rpvegm10.76854435985026
rpvewm16.17173126907776
sizex180
sizey256
sizez256
snrcsf2.3847117264860134
snrgm9.662482587765522
snrtotal9.273038493151349
snrwm15.771921165202514
snrdcsf7.708504264961491
snrdgm18.849939478990816
snrdtotal19.1205727053781
snrdwm30.803274372181992
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk7.997107121111377
summarybgmad21.268693923950195
summarybgmean69.39460754394531
summarybgmedian61.049007415771484
summarybgn2641383.0
summarybgp0535.77230377197266
summarybgp95133.87490692138672
summarybgstdv33.17574691772461
summarycsfk-0.029572520110460854
summarycsfmad113.32952117919922
summarycsfmean260.4688720703125
summarycsfmedian250.25296020507812
summarycsfn25306.0
summarycsfp05108.31736946105957
summarycsfp95441.52423095703125
summarycsfstdv104.9384765625
summarygmk0.02765670587699587
summarygmmad62.767311096191406
summarygmmean611.0219116210938
summarygmmedian611.9544067382812
summarygmn32210.0
summarygmp05504.86204528808594
summarygmp95714.1699371337891
summarygmstdv63.33205795288086
summarywmk0.7010806436462329
summarywmmad57.910438537597656
summarywmmean999.46630859375
summarywmmedian1000.0137939453125
summarywmn222107.0
summarywmp05891.8879272460937
summarywmp951101.4390380859375
summarywmstdv63.40454864501953
tpmoverlapcsf0.22168435156345367
tpmoverlapgm0.5236702561378479
tpmoverlapwm0.56402587890625
wm2max0.5097489927081311

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumdc943530eea0aa70ac03f9e50fd96e95
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.